1 His_kinase#1
364-440 aa · 77 aa · 13.4% of protein
Raw token
His_kinase:364:3.74e-27:440:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS01365
Histidine kinase, Classic
Eisenbergiella porci · GCF_034172685
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS01365Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 574 aa (27.4%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
483-562 aa · 80 aa · 13.9% of protein
Raw token
HATPase_c:483:0.0000155:562:82:109- Raw architecture: His_kinase:364:3.74e-27:440:78:80#HATPase_c:483:0.0000155:562:82:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000009.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29966-32436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_01365RefSeq proteinWP_195841951.1
Context group ID
GCF_034172685::NZ_JAXFEN010000009.1::G00057Context members
SPF95_RS01365SPF95_RS01370
Partner locus tags
SPF95_RS01365SPF95_RS01370
Partner old locus tags
SPF95_01365SPF95_01370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195841951.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS01365Primary locus identifier stored in the genes table.
Old locus tagSPF95_01365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000009.1Sequence record reported by the local genomic context database.
Genomic interval29 966-31 690 nt1 725 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 966-32 436 ntGCF_034172685::NZ_JAXFEN010000009.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000009.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000009.1All displayed genes belong to this local TCS context.
Neighborhood span29 966-32 436 nt2 471 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 966 nt32 436 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS01365GCF_034172685#SPF95_RS01365
HKClassicCurrent focus
29 966-31 690 nt · Forward (+)
SPF95_RS01370GCF_034172685#SPF95_RS01370
RRunclassified
31 678-32 436 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS23595Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1194404
Simplified PFAM architecture for HKOC_1194404
PFAM domain coverage: 76 / 574 aa (13.2%)
1 aa574 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[363-438]
- Domain count: 1
- Matched identifier: HKOC_1194404
- Positioned domains: His_kinase 363-438
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS23595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key