1 HAMP#1
81-147 aa · 67 aa · 20.6% of protein
Raw token
HAMP:81:3.78e-17:147:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS00165
Histidine kinase, Classic
Eisenbergiella porci · GCF_034172685
ClassHKTypeClassicLength325 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034172685#SPF95_RS00165Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length325 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 325 aa (55.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
160-220 aa · 61 aa · 18.8% of protein
Raw token
HisKA:160:0.000000000531:220:61:643 HATPase_c#3
270-321 aa · 52 aa · 16.0% of protein
Raw token
HATPase_c:270:0.0000000000372:321:55:109- Raw architecture: HAMP:81:3.78e-17:147:67:69#HisKA:160:0.000000000531:220:61:64#HATPase_c:270:0.0000000000372:321:55:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034172685::NZ_JAXFEN010000002.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21577-22554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_00165RefSeq proteinWP_276913480.1
Context group ID
GCF_034172685::NZ_JAXFEN010000002.1::G00032Context members
SPF95_RS00165
Partner locus tags
SPF95_RS00165
Partner old locus tags
SPF95_00165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276913480.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS00165Primary locus identifier stored in the genes table.
Old locus tagSPF95_00165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000002.1Sequence record reported by the local genomic context database.
Genomic interval21 577-22 554 nt978 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 577-22 554 ntGCF_034172685::NZ_JAXFEN010000002.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000002.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span21 577-22 554 nt978 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 577 nt22 554 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SPF95_RS00165GCF_034172685#SPF95_RS00165
HKClassicCurrent focus
21 577-22 554 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS03400Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2864524
Simplified PFAM architecture for HKOC_2864524
PFAM domain coverage: 165 / 325 aa (50.8%)
1 aa325 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[95-147] | HisKA[161-219] | HATPase_c[270-322]
- Domain count: 3
- Matched identifier: HKOC_2864524
- Positioned domains: HAMP 95-147 ; HisKA 161-219 ; HATPase_c 270-322
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS03400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key