1 HisKA#1
141-205 aa · 65 aa · 12.2% of protein
Raw token
HisKA:141:1.61e-16:205:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E93_RS01990
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034145625
ClassHKTypeHybridLength531 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034145625#U0E93_RS01990Stable P2CS identifier used across views.
GenomeGCF_034145625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage294 / 531 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
252-363 aa · 112 aa · 21.1% of protein
Raw token
HATPase_c:252:1.77e-30:363:112:1093 Response_reg#3
408-524 aa · 117 aa · 22.0% of protein
Raw token
Response_reg:408:1.19e-25:524:117:111- Raw architecture: HisKA:141:1.61e-16:205:65:64#HATPase_c:252:1.77e-30:363:112:109#Response_reg:408:1.19e-25:524:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034145625::NZ_JAWZJO010000010.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span103185-104780Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034145625::NZ_JAWZJO010000010.1::G00006Context members
U0E93_RS01990
Partner locus tags
U0E93_RS01990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632840.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PD07Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PD07_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E93_RS01990Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZJO010000010.1Sequence record reported by the local genomic context database.
Genomic interval103 185-104 780 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 185-104 780 ntGCF_034145625::NZ_JAWZJO010000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034145625::NZ_JAWZJO010000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZJO010000010.1All displayed genes belong to this local TCS context.
Neighborhood span103 185-104 780 nt1 596 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 185 nt104 780 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E93_RS01990GCF_034145625#U0E93_RS01990
HKHybridCurrent focus
103 185-104 780 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS23155Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1352479
Simplified PFAM architecture for HKOC_1352479
PFAM domain coverage: 295 / 531 aa (55.6%)
1 aa531 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[141-205] | HATPase_c[252-365] | Response_reg[408-523]
- Domain count: 3
- Matched identifier: HKOC_1352479
- Positioned domains: HisKA 141-205 ; HATPase_c 252-365 ; Response_reg 408-523
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS23155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034145625
AssemblyASM3414562v1 · Scaffoldhaploid
Genome composition7 177 945 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 283 · HK 139 · RR 139CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key