1 Response_reg#1
4-113 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:4:0.000000000000168:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E93_RS00960
Response regulator LytTR family
Hungatella effluvii · GCF_034145625
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034145625#U0E93_RS00960Stable P2CS identifier used across views.
GenomeGCF_034145625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 239 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-231 aa · 91 aa · 38.1% of protein
Raw token
LytTR:141:2.51e-20:231:96:98- Raw architecture: Response_reg:4:0.000000000000168:113:112:111#LytTR:141:2.51e-20:231:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034145625::NZ_JAWZJO010000004.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span91042-91761Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034145625::NZ_JAWZJO010000004.1::G00003Context members
U0E93_RS00960
Partner locus tags
U0E93_RS00960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007858413.1Primary protein accession used for annex mappings.
UniProt accessionG5HCH9Primary UniProt accession resolved in the annex database.
UniProt IDG5HCH9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E93_RS00960Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZJO010000004.1Sequence record reported by the local genomic context database.
Genomic interval91 042-91 761 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 042-91 761 ntGCF_034145625::NZ_JAWZJO010000004.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034145625::NZ_JAWZJO010000004.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZJO010000004.1All displayed genes belong to this local TCS context.
Neighborhood span91 042-91 761 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 042 nt91 761 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E93_RS00960GCF_034145625#U0E93_RS00960
RRLytTRCurrent focus
91 042-91 761 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000233455#HMPREF9469_RS01445Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0906039
Simplified PFAM architecture for RROC_0906039
PFAM domain coverage: 203 / 239 aa (84.9%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-231]
- Domain count: 2
- Matched identifier: RROC_0906039
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 141-231 ; LytTR 141-231
Cluster members and taxonomy
Representative gene: GCF_000233455#HMPREF9469_RS01445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034145625
AssemblyASM3414562v1 · Scaffoldhaploid
Genome composition7 177 945 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 283 · HK 139 · RR 139CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key