1 His_kinase#1
377-457 aa · 81 aa · 13.9% of protein
Raw token
His_kinase:377:6.99e-28:457:81:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E93_RS00255
Histidine kinase, Classic
Hungatella effluvii · GCF_034145625
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034145625#U0E93_RS00255Stable P2CS identifier used across views.
GenomeGCF_034145625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 582 aa (32.3%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
474-580 aa · 107 aa · 18.4% of protein
Raw token
HATPase_c:474:0.0000000000000248:580:112:109- Raw architecture: His_kinase:377:6.99e-28:457:81:80#HATPase_c:474:0.0000000000000248:580:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034145625::NZ_JAWZJO010000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51094-53600Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034145625::NZ_JAWZJO010000002.1::G00001Context members
U0E93_RS00250U0E93_RS00255
Partner locus tags
U0E93_RS00250U0E93_RS00255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531228.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P0K1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P0K1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E93_RS00255Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZJO010000002.1Sequence record reported by the local genomic context database.
Genomic interval51 852-53 600 nt1 749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 094-53 600 ntGCF_034145625::NZ_JAWZJO010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034145625::NZ_JAWZJO010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZJO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span51 094-53 600 nt2 507 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 094 nt53 600 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E93_RS00250GCF_034145625#U0E93_RS00250
RRunclassified
51 094-51 855 nt · Forward (+)
U0E93_RS00255GCF_034145625#U0E93_RS00255
HKClassicCurrent focus
51 852-53 600 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS17000Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1153334
Simplified PFAM architecture for HKOC_1153334
PFAM domain coverage: 187 / 582 aa (32.1%)
1 aa582 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[377-457] | HATPase_c[474-579]
- Domain count: 2
- Matched identifier: HKOC_1153334
- Positioned domains: His_kinase 377-457 ; HATPase_c 474-579
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS17000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034145625
AssemblyASM3414562v1 · Scaffoldhaploid
Genome composition7 177 945 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 283 · HK 139 · RR 139CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key