1 Response_reg#1
5-114 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:5:4.17e-16:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E93_RS00815
Response regulator LytTR family
Hungatella effluvii · GCF_034145625
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034145625#U0E93_RS00815Stable P2CS identifier used across views.
GenomeGCF_034145625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 241 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-232 aa · 94 aa · 39.0% of protein
Raw token
LytTR:139:4.19e-17:232:99:98- Raw architecture: Response_reg:5:4.17e-16:114:112:111#LytTR:139:4.19e-17:232:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034145625::NZ_JAWZJO010000004.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span57201-57926Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034145625::NZ_JAWZJO010000004.1::G00002Context members
U0E93_RS00815
Partner locus tags
U0E93_RS00815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117624350.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4TMI4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4TMI4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E93_RS00815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWZJO010000004.1Sequence record reported by the local genomic context database.
Genomic interval57 201-57 926 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 201-57 926 ntGCF_034145625::NZ_JAWZJO010000004.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034145625::NZ_JAWZJO010000004.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWZJO010000004.1All displayed genes belong to this local TCS context.
Neighborhood span57 201-57 926 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 201 nt57 926 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E93_RS00815GCF_034145625#U0E93_RS00815
RRLytTRCurrent focus
57 201-57 926 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS21610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867694
Simplified PFAM architecture for RROC_0867694
PFAM domain coverage: 203 / 241 aa (84.2%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-116] | LytTR[142-232]
- Domain count: 2
- Matched identifier: RROC_0867694
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; LytTR 142-232 ; LytTR 142-232
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS21610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034145625
AssemblyASM3414562v1 · Scaffoldhaploid
Genome composition7 177 945 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 283 · HK 139 · RR 139CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key