1 Response_reg#1
4-114 aa · 111 aa · 55.5% of protein
Raw token
Response_reg:4:1.15e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X55_RS08870
Response regulator NarL family
Streptococcus sp. · GCF_032550095
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032550095#E6X55_RS08870Stable P2CS identifier used across views.
GenomeGCF_032550095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 200 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
138-193 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:138:6.22e-23:193:56:58- Raw architecture: Response_reg:4:1.15e-22:114:111:111#HTH_LUXR:138:6.22e-23:193:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032550095::NZ_JAWGAB010000027.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11648-13329Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X55_08860RefSeq proteinWP_003094426.1
Context group ID
GCF_032550095::NZ_JAWGAB010000027.1::G00004Context members
E6X55_RS08865E6X55_RS08870
Partner locus tags
E6X55_RS08865E6X55_RS08870
Partner old locus tags
E6X55_08855E6X55_08860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003094426.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X55_RS08870Primary locus identifier stored in the genes table.
Old locus tagE6X55_08860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGAB010000027.1Sequence record reported by the local genomic context database.
Genomic interval12 727-13 329 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 648-13 329 ntGCF_032550095::NZ_JAWGAB010000027.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550095::NZ_JAWGAB010000027.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGAB010000027.1All displayed genes belong to this local TCS context.
Neighborhood span11 648-13 329 nt1 682 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 648 nt13 329 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6X55_RS08865GCF_032550095#E6X55_RS08865
HKClassic
11 648-12 730 nt · Forward (+)
E6X55_RS08870GCF_032550095#E6X55_RS08870
RRNarLCurrent focus
12 727-13 329 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448605#HSISS3_RS03580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134988
Simplified PFAM architecture for RROC_2134988
PFAM domain coverage: 167 / 200 aa (83.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[138-193]
- Domain count: 2
- Matched identifier: RROC_2134988
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GerE 138-193 ; GerE 138-193
Cluster members and taxonomy
Representative gene: GCF_000448605#HSISS3_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032550095
AssemblyASM3255009v1 · Scaffoldhaploid
Genome composition2 064 916 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 26 · HK 13 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key