1 Response_reg#1
5-115 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:5:5.02e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X55_RS03025
Response regulator OmpR family
Streptococcus sp. · GCF_032550095
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032550095#E6X55_RS03025Stable P2CS identifier used across views.
GenomeGCF_032550095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 228 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-209 aa · 63 aa · 27.6% of protein
Raw token
Trans_reg_C:147:6.24e-19:209:63:77- Raw architecture: Response_reg:5:5.02e-35:115:111:111#Trans_reg_C:147:6.24e-19:209:63:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032550095::NZ_JAWGAB010000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54409-56322Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X55_03025RefSeq proteinWP_004183958.1
Context group ID
GCF_032550095::NZ_JAWGAB010000005.1::G00008Context members
E6X55_RS03025E6X55_RS03030
Partner locus tags
E6X55_RS03025E6X55_RS03030
Partner old locus tags
E6X55_03025E6X55_03030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004183958.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X55_RS03025Primary locus identifier stored in the genes table.
Old locus tagE6X55_03025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGAB010000005.1Sequence record reported by the local genomic context database.
Genomic interval54 409-55 095 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 409-56 322 ntGCF_032550095::NZ_JAWGAB010000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550095::NZ_JAWGAB010000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGAB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span54 409-56 322 nt1 914 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 409 nt56 322 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6X55_RS03025GCF_032550095#E6X55_RS03025
RROmpRCurrent focus
54 409-55 095 nt · Forward (+)
E6X55_RS03030GCF_032550095#E6X55_RS03030
HKClassic
55 099-56 322 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448665#HSISS2_RS06360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304780
Simplified PFAM architecture for RROC_1304780
PFAM domain coverage: 171 / 228 aa (75.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-207]
- Domain count: 2
- Matched identifier: RROC_1304780
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-207 ; Trans_reg_C 147-207
Cluster members and taxonomy
Representative gene: GCF_000448665#HSISS2_RS06360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032550095
AssemblyASM3255009v1 · Scaffoldhaploid
Genome composition2 064 916 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 26 · HK 13 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key