1 Response_reg#1
4-114 aa · 111 aa · 55.5% of protein
Raw token
Response_reg:4:1.15e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HSISS3_RS03580
Response regulator NarL family
Streptococcus sp. HSISS3 · GCF_000448605
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448605#HSISS3_RS03580Stable P2CS identifier used across views.
GenomeGCF_000448605Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 200 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
138-193 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:138:6.22e-23:193:56:58- Raw architecture: Response_reg:4:1.15e-22:114:111:111#HTH_LUXR:138:6.22e-23:193:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448605::NZ_CM002130.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span736821-737423Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHSISS3_1740RefSeq proteinWP_003094426.1
Context group ID
GCF_000448605::NZ_CM002130.1::G00008Context members
HSISS3_RS03580
Partner locus tags
HSISS3_RS03580
Partner old locus tags
HSISS3_1740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003094426.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHSISS3_RS03580Primary locus identifier stored in the genes table.
Old locus tagHSISS3_1740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM002130.1Sequence record reported by the local genomic context database.
Genomic interval736 821-737 423 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span736 821-737 423 ntGCF_000448605::NZ_CM002130.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448605::NZ_CM002130.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM002130.1All displayed genes belong to this local TCS context.
Neighborhood span736 821-737 423 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
736 821 nt737 423 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HSISS3_RS03580GCF_000448605#HSISS3_RS03580
RRNarLCurrent focus
736 821-737 423 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448605#HSISS3_RS03580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134988
Simplified PFAM architecture for RROC_2134988
PFAM domain coverage: 167 / 200 aa (83.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[138-193]
- Domain count: 2
- Matched identifier: RROC_2134988
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GerE 138-193 ; GerE 138-193
Cluster members and taxonomy
Representative gene: GCF_000448605#HSISS3_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 316 412 · GCF_000448605
AssemblyHSISS3_1.0 · Chromosomehaploid
Genome composition2 399 857 bp · 39,5% GCStreptococcus sp. HSISS3
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key