1 HisKA#1
190-251 aa · 62 aa · 15.2% of protein
Raw token
HisKA:190:0.0000000000251:251:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X55_RS03030
Histidine kinase, Classic
Streptococcus sp. · GCF_032550095
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032550095#E6X55_RS03030Stable P2CS identifier used across views.
GenomeGCF_032550095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 407 aa (41.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
298-405 aa · 108 aa · 26.5% of protein
Raw token
HATPase_c:298:0.000000000558:405:114:109- Raw architecture: HisKA:190:0.0000000000251:251:63:64#HATPase_c:298:0.000000000558:405:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032550095::NZ_JAWGAB010000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54409-56322Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X55_03030RefSeq proteinWP_004183955.1
Context group ID
GCF_032550095::NZ_JAWGAB010000005.1::G00008Context members
E6X55_RS03025E6X55_RS03030
Partner locus tags
E6X55_RS03025E6X55_RS03030
Partner old locus tags
E6X55_03025E6X55_03030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004183955.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X55_RS03030Primary locus identifier stored in the genes table.
Old locus tagE6X55_03030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGAB010000005.1Sequence record reported by the local genomic context database.
Genomic interval55 099-56 322 nt1 224 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 409-56 322 ntGCF_032550095::NZ_JAWGAB010000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550095::NZ_JAWGAB010000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGAB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span54 409-56 322 nt1 914 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 409 nt56 322 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6X55_RS03025GCF_032550095#E6X55_RS03025
RROmpR
54 409-55 095 nt · Forward (+)
E6X55_RS03030GCF_032550095#E6X55_RS03030
HKClassicCurrent focus
55 099-56 322 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448605#HSISS3_RS07530Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380248
Simplified PFAM architecture for HKOC_2380248
PFAM domain coverage: 167 / 407 aa (41.0%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-251] | HATPase_c[298-403]
- Domain count: 2
- Matched identifier: HKOC_2380248
- Positioned domains: HisKA 191-251 ; HATPase_c 298-403
Cluster members and taxonomy
Representative gene: GCF_000448605#HSISS3_RS07530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032550095
AssemblyASM3255009v1 · Scaffoldhaploid
Genome composition2 064 916 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 26 · HK 13 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key