1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.97e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS00095
Response regulator OmpR family
Clostridium paraputrificum · GCF_028210435
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_028210435#PMW03_RS00095Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:7.34e-25:227:77:77- Raw architecture: Response_reg:5:1.97e-36:114:111:111#Trans_reg_C:151:7.34e-25:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_028210435::NZ_JAQLCS010000001.1::G00014
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span15898-21802Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_00095RefSeq proteinWP_081663676.1
Context group ID
GCF_028210435::NZ_JAQLCS010000001.1::G00014Context members
PMW03_RS00085PMW03_RS00090PMW03_RS00095PMW03_RS00100
Partner locus tags
PMW03_RS00085PMW03_RS00090PMW03_RS00095PMW03_RS00100
Partner old locus tags
PMW03_00085PMW03_00090PMW03_00095PMW03_00100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081663676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS00095Primary locus identifier stored in the genes table.
Old locus tagPMW03_00095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000001.1Sequence record reported by the local genomic context database.
Genomic interval18 424-19 116 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 898-21 802 ntGCF_028210435::NZ_JAQLCS010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span15 898-21 802 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 898 nt21 802 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
PMW03_RS00085GCF_028210435#PMW03_RS00085
RRunclassified
15 898-16 560 nt · Reverse (-)
PMW03_RS00090GCF_028210435#PMW03_RS00090
HKClassic
16 538-18 403 nt · Reverse (-)
PMW03_RS00095GCF_028210435#PMW03_RS00095
RROmpRCurrent focus
18 424-19 116 nt · Reverse (-)
PMW03_RS00100GCF_028210435#PMW03_RS00100
HKClassic
19 085-21 802 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0110465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202211
Simplified PFAM architecture for RROC_1202211
PFAM domain coverage: 187 / 230 aa (81.3%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1202211
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0110465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key