1 KdpD#1
23-232 aa · 210 aa · 23.2% of protein
Raw token
KdpD:23:1.65e-137:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS00100
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210435
ClassHKTypeClassicLength905 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_028210435#PMW03_RS00100Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length905 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage491 / 905 aa (54.3%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa905 aa
Domain-by-domain annotation4 items
2 GAF_3#2
546-650 aa · 105 aa · 11.6% of protein
Raw token
GAF_3:546:0.0000000238:650:109:1293 HisKA#3
671-736 aa · 66 aa · 7.3% of protein
Raw token
HisKA:671:0.00000000000459:736:66:644 HATPase_c#4
781-890 aa · 110 aa · 12.2% of protein
Raw token
HATPase_c:781:4.52e-27:890:111:109- Raw architecture: KdpD:23:1.65e-137:232:210:210#GAF_3:546:0.0000000238:650:109:129#HisKA:671:0.00000000000459:736:66:64#HATPase_c:781:4.52e-27:890:111:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_028210435::NZ_JAQLCS010000001.1::G00014
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span15898-21802Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_00100RefSeq proteinWP_055184248.1
Context group ID
GCF_028210435::NZ_JAQLCS010000001.1::G00014Context members
PMW03_RS00085PMW03_RS00090PMW03_RS00095PMW03_RS00100
Partner locus tags
PMW03_RS00085PMW03_RS00090PMW03_RS00095PMW03_RS00100
Partner old locus tags
PMW03_00085PMW03_00090PMW03_00095PMW03_00100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055184248.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS00100Primary locus identifier stored in the genes table.
Old locus tagPMW03_00100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000001.1Sequence record reported by the local genomic context database.
Genomic interval19 085-21 802 nt2 718 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 898-21 802 ntGCF_028210435::NZ_JAQLCS010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span15 898-21 802 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 898 nt21 802 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
PMW03_RS00085GCF_028210435#PMW03_RS00085
RRunclassified
15 898-16 560 nt · Reverse (-)
PMW03_RS00090GCF_028210435#PMW03_RS00090
HKClassic
16 538-18 403 nt · Reverse (-)
PMW03_RS00095GCF_028210435#PMW03_RS00095
RROmpR
18 424-19 116 nt · Reverse (-)
PMW03_RS00100GCF_028210435#PMW03_RS00100
HKClassicCurrent focus
19 085-21 802 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS09055Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0398646
Simplified PFAM architecture for HKOC_0398646
PFAM domain coverage: 490 / 905 aa (54.1%)
1 aa905 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[401-504] | HisKA[671-736] | HATPase_c[781-890]
- Domain count: 4
- Matched identifier: HKOC_0398646
- Positioned domains: KdpD 23-232 ; DUF4118 401-504 ; HisKA 671-736 ; HATPase_c 781-890
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key