1 Response_reg#1
4-114 aa · 111 aa · 50.5% of protein
Raw token
Response_reg:4:1.24e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS00085
Response regulator, unclassified
Clostridium paraputrificum · GCF_028210435
ClassRRTypeunclassifiedLength220 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_028210435#PMW03_RS00085Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTPR_2
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 220 aa (65.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 TPR_2Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 TPR_2#2
164-197 aa · 34 aa · 15.5% of protein
Raw token
TPR_2:164:0.00000333:197:34:34- Raw architecture: Response_reg:4:1.24e-41:114:111:111#TPR_2:164:0.00000333:197:34:34
- Domain description: 1 Response_reg,1 TPR_2
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_028210435::NZ_JAQLCS010000001.1::G00014
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span15898-21802Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_00085RefSeq proteinWP_027098533.1
Context group ID
GCF_028210435::NZ_JAQLCS010000001.1::G00014Context members
PMW03_RS00085PMW03_RS00090PMW03_RS00095PMW03_RS00100
Partner locus tags
PMW03_RS00085PMW03_RS00090PMW03_RS00095PMW03_RS00100
Partner old locus tags
PMW03_00085PMW03_00090PMW03_00095PMW03_00100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098533.1Primary protein accession used for annex mappings.
UniProt accessionA0A174VBX5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174VBX5_9CLOTDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS00085Primary locus identifier stored in the genes table.
Old locus tagPMW03_00085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000001.1Sequence record reported by the local genomic context database.
Genomic interval15 898-16 560 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 898-21 802 ntGCF_028210435::NZ_JAQLCS010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span15 898-21 802 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 898 nt21 802 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
PMW03_RS00085GCF_028210435#PMW03_RS00085
RRunclassifiedCurrent focus
15 898-16 560 nt · Reverse (-)
PMW03_RS00090GCF_028210435#PMW03_RS00090
HKClassic
16 538-18 403 nt · Reverse (-)
PMW03_RS00095GCF_028210435#PMW03_RS00095
RROmpR
18 424-19 116 nt · Reverse (-)
PMW03_RS00100GCF_028210435#PMW03_RS00100
HKClassic
19 085-21 802 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0110455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + TPR_82 domains in the representative PFAM annotation.
PFAM architecture for RROC_1724537
Simplified PFAM architecture for RROC_1724537
PFAM domain coverage: 143 / 220 aa (65.0%)
1 aa220 aa
Response_regTPR_8
- Simplified architecture: Response_reg + TPR_8
- Raw architecture: Response_reg[4-113] | TPR_8[164-196]
- Domain count: 2
- Matched identifier: RROC_1724537
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; TPR_8 164-196 ; TPR_8 164-196
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0110455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key