1 Response_reg#1
4-118 aa · 115 aa · 50.4% of protein
Raw token
Response_reg:4:1.45e-24:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS03125
Response regulator, unclassified
Clostridium paraputrificum · GCF_028210435
ClassRRTypeunclassifiedLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210435#PMW03_RS03125Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 228 aa (68.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_11#2
164-205 aa · 42 aa · 18.4% of protein
Raw token
HTH_11:164:0.000000268:205:42:52- Raw architecture: Response_reg:4:1.45e-24:118:115:111#HTH_11:164:0.000000268:205:42:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210435::NZ_JAQLCS010000015.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11090-11776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_03135RefSeq proteinWP_242974257.1
Context group ID
GCF_028210435::NZ_JAQLCS010000015.1::G00008Context members
PMW03_RS03125
Partner locus tags
PMW03_RS03125
Partner old locus tags
PMW03_03135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242974257.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS03125Primary locus identifier stored in the genes table.
Old locus tagPMW03_03135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000015.1Sequence record reported by the local genomic context database.
Genomic interval11 090-11 776 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 090-11 776 ntGCF_028210435::NZ_JAQLCS010000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000015.1All displayed genes belong to this local TCS context.
Neighborhood span11 090-11 776 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 090 nt11 776 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMW03_RS03125GCF_028210435#PMW03_RS03125
RRunclassifiedCurrent focus
11 090-11 776 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS08370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_112 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314329
Simplified PFAM architecture for RROC_1314329
PFAM domain coverage: 155 / 228 aa (68.0%)
1 aa228 aa
Response_regHTH_11
- Simplified architecture: Response_reg + HTH_11
- Raw architecture: Response_reg[4-117] | HTH_11[165-205]
- Domain count: 2
- Matched identifier: RROC_1314329
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_11 165-205 ; HTH_11 165-205
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS08370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key