1 Response_reg#1
10-113 aa · 104 aa · 20.7% of protein
Raw token
Response_reg:10:6.07e-28:113:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGX96_RS01000
Response regulator RpfG family
Faecalibacillus intestinalis · GCF_027682845
ClassRRTypeRpfGLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027682845#PGX96_RS01000Stable P2CS identifier used across views.
GenomeGCF_027682845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 502 aa (42.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation2 items
2 HD#2
196-302 aa · 107 aa · 21.3% of protein
Raw token
HD:196:0.000000000000013:302:107:110- Raw architecture: Response_reg:10:6.07e-28:113:105:111#HD:196:0.000000000000013:302:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027682845::NZ_JAQCYX010000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15619-19049Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027682845::NZ_JAQCYX010000005.1::G00013Context members
PGX96_RS00995PGX96_RS01000
Partner locus tags
PGX96_RS00995PGX96_RS01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199676904.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGX96_RS01000Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCYX010000005.1Sequence record reported by the local genomic context database.
Genomic interval17 541-19 049 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 619-19 049 ntGCF_027682845::NZ_JAQCYX010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027682845::NZ_JAQCYX010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCYX010000005.1All displayed genes belong to this local TCS context.
Neighborhood span15 619-19 049 nt3 431 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 619 nt19 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGX96_RS00995GCF_027682845#PGX96_RS00995
HKHybrid
15 619-17 541 nt · Forward (+)
PGX96_RS01000GCF_027682845#PGX96_RS01000
RRRpfGCurrent focus
17 541-19 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013361255#HUU89_RS07535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0156291
Simplified PFAM architecture for RROC_0156291
PFAM domain coverage: 245 / 502 aa (48.8%)
1 aa502 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[10-120] | HD_5[190-323]
- Domain count: 2
- Matched identifier: RROC_0156291
- Positioned domains: Response_reg 10-120 ; HD_5 190-323
Cluster members and taxonomy
Representative gene: GCF_013361255#HUU89_RS07535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027682845
AssemblyASM2768284v1 · Scaffoldhaploid
Genome composition2 619 676 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 38 · HK 9 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key