1 Response_reg#1
10-113 aa · 104 aa · 20.7% of protein
Raw token
Response_reg:10:6.07e-28:113:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HUU89_RS07535
Response regulator RpfG family
Faecalibacillus sp. H12 · GCF_013361255
ClassRRTypeRpfGLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013361255#HUU89_RS07535Stable P2CS identifier used across views.
GenomeGCF_013361255Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 502 aa (42.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation2 items
2 HD#2
196-302 aa · 107 aa · 21.3% of protein
Raw token
HD:196:0.000000000000013:302:107:110- Raw architecture: Response_reg:10:6.07e-28:113:105:111#HD:196:0.000000000000013:302:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013361255::NZ_JABWDK010000008.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47173-50837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHUU89_07520RefSeq proteinWP_199676904.1
Context group ID
GCF_013361255::NZ_JABWDK010000008.1::G00033Context members
HUU89_RS07535HUU89_RS07540
Partner locus tags
HUU89_RS07535HUU89_RS07540
Partner old locus tags
HUU89_07520HUU89_07525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199676904.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHUU89_RS07535Primary locus identifier stored in the genes table.
Old locus tagHUU89_07520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABWDK010000008.1Sequence record reported by the local genomic context database.
Genomic interval47 173-48 681 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 173-50 837 ntGCF_013361255::NZ_JABWDK010000008.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013361255::NZ_JABWDK010000008.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABWDK010000008.1All displayed genes belong to this local TCS context.
Neighborhood span47 173-50 837 nt3 665 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 173 nt50 837 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HUU89_RS07535GCF_013361255#HUU89_RS07535
RRRpfGCurrent focus
47 173-48 681 nt · Reverse (-)
HUU89_RS07540GCF_013361255#HUU89_RS07540
HKHybrid
48 681-50 837 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013361255#HUU89_RS07535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0156291
Simplified PFAM architecture for RROC_0156291
PFAM domain coverage: 245 / 502 aa (48.8%)
1 aa502 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[10-120] | HD_5[190-323]
- Domain count: 2
- Matched identifier: RROC_0156291
- Positioned domains: Response_reg 10-120 ; HD_5 190-323
Cluster members and taxonomy
Representative gene: GCF_013361255#HUU89_RS07535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 726 452 · GCF_013361255
AssemblyASM1336125v1 · Scaffoldhaploid
Genome composition2 806 098 bp · 30,0% GCFaecalibacillus sp. H12
Signal transduction countsGenes 54 · HK 20 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key