1 Response_reg#1
4-105 aa · 102 aa · 45.1% of protein
Raw token
Response_reg:4:1.04e-18:105:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGX96_RS05150
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_027682845
ClassRRTypeLytTRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027682845#PGX96_RS05150Stable P2CS identifier used across views.
GenomeGCF_027682845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-216 aa · 83 aa · 36.7% of protein
Raw token
LytTR:134:0.00000000000546:216:88:98- Raw architecture: Response_reg:4:1.04e-18:105:104:111#LytTR:134:0.00000000000546:216:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027682845::NZ_JAQCYX010000066.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7967-8647Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027682845::NZ_JAQCYX010000066.1::G00024Context members
PGX96_RS05150
Partner locus tags
PGX96_RS05150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_333575395.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGX96_RS05150Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCYX010000066.1Sequence record reported by the local genomic context database.
Genomic interval7 967-8 647 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 967-8 647 ntGCF_027682845::NZ_JAQCYX010000066.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027682845::NZ_JAQCYX010000066.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCYX010000066.1All displayed genes belong to this local TCS context.
Neighborhood span7 967-8 647 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 967 nt8 647 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGX96_RS05150GCF_027682845#PGX96_RS05150
RRLytTRCurrent focus
7 967-8 647 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667095#I4U63_RS10360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0945816
Simplified PFAM architecture for RROC_0945816
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[141-228]
- Domain count: 2
- Matched identifier: RROC_0945816
- Positioned domains: Response_reg 3-116 ; LytTR 141-228
Cluster members and taxonomy
Representative gene: GCF_015667095#I4U63_RS10360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027682845
AssemblyASM2768284v1 · Scaffoldhaploid
Genome composition2 619 676 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 38 · HK 9 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key