1 HisKA#1
190-253 aa · 64 aa · 15.5% of protein
Raw token
HisKA:190:0.0000000273:253:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGX96_RS04700
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_027682845
ClassHKTypeClassicLength414 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027682845#PGX96_RS04700Stable P2CS identifier used across views.
GenomeGCF_027682845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 414 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-411 aa · 110 aa · 26.6% of protein
Raw token
HATPase_c:302:7.96e-29:411:110:109- Raw architecture: HisKA:190:0.0000000273:253:64:64#HATPase_c:302:7.96e-29:411:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027682845::NZ_JAQCYX010000057.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6106-7350Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027682845::NZ_JAQCYX010000057.1::G00017Context members
PGX96_RS04700
Partner locus tags
PGX96_RS04700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199691085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGX96_RS04700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCYX010000057.1Sequence record reported by the local genomic context database.
Genomic interval6 106-7 350 nt1 245 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 106-7 350 ntGCF_027682845::NZ_JAQCYX010000057.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027682845::NZ_JAQCYX010000057.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCYX010000057.1All displayed genes belong to this local TCS context.
Neighborhood span6 106-7 350 nt1 245 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 106 nt7 350 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGX96_RS04700GCF_027682845#PGX96_RS04700
HKClassicCurrent focus
6 106-7 350 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027668845#PHA32_RS00930Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2323258
Simplified PFAM architecture for HKOC_2323258
PFAM domain coverage: 176 / 414 aa (42.5%)
1 aa414 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[189-253] | HATPase_c[302-412]
- Domain count: 2
- Matched identifier: HKOC_2323258
- Positioned domains: HisKA 189-253 ; HATPase_c 302-412
Cluster members and taxonomy
Representative gene: GCF_027668845#PHA32_RS00930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027682845
AssemblyASM2768284v1 · Scaffoldhaploid
Genome composition2 619 676 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 38 · HK 9 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key