1 HisKA#1
265-331 aa · 67 aa · 10.5% of protein
Raw token
HisKA:265:6.17e-17:331:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGX96_RS00995
Histidine kinase, Hybrid
Faecalibacillus intestinalis · GCF_027682845
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027682845#PGX96_RS00995Stable P2CS identifier used across views.
GenomeGCF_027682845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 640 aa (47.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
378-496 aa · 119 aa · 18.6% of protein
Raw token
HATPase_c:378:7.76e-27:496:119:1093 Response_reg#3
519-635 aa · 117 aa · 18.3% of protein
Raw token
Response_reg:519:3.67e-28:635:117:111- Raw architecture: HisKA:265:6.17e-17:331:67:64#HATPase_c:378:7.76e-27:496:119:109#Response_reg:519:3.67e-28:635:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027682845::NZ_JAQCYX010000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15619-19049Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027682845::NZ_JAQCYX010000005.1::G00013Context members
PGX96_RS00995PGX96_RS01000
Partner locus tags
PGX96_RS00995PGX96_RS01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199676905.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGX96_RS00995Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCYX010000005.1Sequence record reported by the local genomic context database.
Genomic interval15 619-17 541 nt1 923 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 619-19 049 ntGCF_027682845::NZ_JAQCYX010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027682845::NZ_JAQCYX010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCYX010000005.1All displayed genes belong to this local TCS context.
Neighborhood span15 619-19 049 nt3 431 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 619 nt19 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGX96_RS00995GCF_027682845#PGX96_RS00995
HKHybridCurrent focus
15 619-17 541 nt · Forward (+)
PGX96_RS01000GCF_027682845#PGX96_RS01000
RRRpfG
17 541-19 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027668845#PHA32_RS02085Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0737611
Simplified PFAM architecture for HKOC_0737611
PFAM domain coverage: 299 / 718 aa (41.6%)
1 aa718 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[343-409] | HATPase_c[459-573] | Response_reg[597-713]
- Domain count: 3
- Matched identifier: HKOC_0737611
- Positioned domains: HisKA 343-409 ; HATPase_c 459-573 ; Response_reg 597-713
Cluster members and taxonomy
Representative gene: GCF_027668845#PHA32_RS02085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027682845
AssemblyASM2768284v1 · Scaffoldhaploid
Genome composition2 619 676 bp · 30,0% GCFaecalibacillus intestinalis
Signal transduction countsGenes 38 · HK 9 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key