1 HisKA#1
85-149 aa · 65 aa · 21.3% of protein
Raw token
HisKA:85:0.0000000345:149:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGS25_RS02575
Histidine kinase, Classic
Butyricicoccus sp. AM78-15b2TA · GCF_027665985
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027665985#PGS25_RS02575Stable P2CS identifier used across views.
GenomeGCF_027665985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 305 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-305 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:202:3.44e-32:305:104:109- Raw architecture: HisKA:85:0.0000000345:149:65:64#HATPase_c:202:3.44e-32:305:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027665985::NZ_JAQEHY010000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120513-122128Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027665985::NZ_JAQEHY010000002.1::G00016Context members
PGS25_RS02570PGS25_RS02575
Partner locus tags
PGS25_RS02570PGS25_RS02575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270417609.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGS25_RS02575Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEHY010000002.1Sequence record reported by the local genomic context database.
Genomic interval121 211-122 128 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span120 513-122 128 ntGCF_027665985::NZ_JAQEHY010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027665985::NZ_JAQEHY010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEHY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span120 513-122 128 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 513 nt122 128 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGS25_RS02570GCF_027665985#PGS25_RS02570
RROmpR
120 513-121 205 nt · Forward (+)
PGS25_RS02575GCF_027665985#PGS25_RS02575
HKClassicCurrent focus
121 211-122 128 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027665985#PGS25_RS02575The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882770
Simplified PFAM architecture for HKOC_2882770
PFAM domain coverage: 169 / 305 aa (55.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-147] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882770
- Positioned domains: HisKA 85-147 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_027665985#PGS25_RS02575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 002 516 · GCF_027665985
AssemblyASM2766598v1 · Scaffoldhaploid
Genome composition3 187 134 bp · 53,5% GCButyricicoccus sp. AM78-15b2TA
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key