1 Response_reg#1
6-116 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:6:2.77e-29:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGS25_RS01225
Response regulator, unclassified
Butyricicoccus sp. AM78-15b2TA · GCF_027665985
ClassRRTypeunclassifiedLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027665985#PGS25_RS01225Stable P2CS identifier used across views.
GenomeGCF_027665985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 224 aa (49.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.77e-29:116:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027665985::NZ_JAQEHY010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span216270-216944Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027665985::NZ_JAQEHY010000001.1::G00005Context members
PGS25_RS01225
Partner locus tags
PGS25_RS01225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118479595.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGS25_RS01225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEHY010000001.1Sequence record reported by the local genomic context database.
Genomic interval216 270-216 944 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 270-216 944 ntGCF_027665985::NZ_JAQEHY010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027665985::NZ_JAQEHY010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEHY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span216 270-216 944 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 270 nt216 944 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGS25_RS01225GCF_027665985#PGS25_RS01225
RRunclassifiedCurrent focus
216 270-216 944 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477715#DWZ82_RS06400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1543464
Simplified PFAM architecture for RROC_1543464
PFAM domain coverage: 111 / 224 aa (49.6%)
1 aa224 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_1543464
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_003477715#DWZ82_RS06400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 002 516 · GCF_027665985
AssemblyASM2766598v1 · Scaffoldhaploid
Genome composition3 187 134 bp · 53,5% GCButyricicoccus sp. AM78-15b2TA
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key