1 HisKA#1
341-407 aa · 67 aa · 9.3% of protein
Raw token
HisKA:341:0.000000000000009:407:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGS25_RS00780
Histidine kinase, Hybrid
Butyricicoccus sp. AM78-15b2TA · GCF_027665985
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027665985#PGS25_RS00780Stable P2CS identifier used across views.
GenomeGCF_027665985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 721 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-572 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:454:6.81e-28:572:120:1093 Response_reg#3
596-713 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:596:1.6e-23:713:118:111- Raw architecture: HisKA:341:0.000000000000009:407:67:64#HATPase_c:454:6.81e-28:572:120:109#Response_reg:596:1.6e-23:713:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027665985::NZ_JAQEHY010000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span130925-133090Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027665985::NZ_JAQEHY010000001.1::G00003Context members
PGS25_RS00780
Partner locus tags
PGS25_RS00780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118479663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGS25_RS00780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEHY010000001.1Sequence record reported by the local genomic context database.
Genomic interval130 925-133 090 nt2 166 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span130 925-133 090 ntGCF_027665985::NZ_JAQEHY010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027665985::NZ_JAQEHY010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEHY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span130 925-133 090 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 925 nt133 090 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGS25_RS00780GCF_027665985#PGS25_RS00780
HKHybridCurrent focus
130 925-133 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477715#DWZ82_RS06665Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730896
Simplified PFAM architecture for HKOC_0730896
PFAM domain coverage: 300 / 721 aa (41.6%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-407] | HATPase_c[455-570] | Response_reg[596-712]
- Domain count: 3
- Matched identifier: HKOC_0730896
- Positioned domains: HisKA 341-407 ; HATPase_c 455-570 ; Response_reg 596-712
Cluster members and taxonomy
Representative gene: GCF_003477715#DWZ82_RS06665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 002 516 · GCF_027665985
AssemblyASM2766598v1 · Scaffoldhaploid
Genome composition3 187 134 bp · 53,5% GCButyricicoccus sp. AM78-15b2TA
Signal transduction countsGenes 82 · HK 38 · RR 42CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key