1 Response_reg#1
24-105 aa · 82 aa · 36.9% of protein
Raw token
Response_reg:24:0.00000000000000472:105:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE550_RS03935
Response regulator LytTR family
Blautia faecis · GCF_024461195
ClassRRTypeLytTRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024461195#NE550_RS03935Stable P2CS identifier used across views.
GenomeGCF_024461195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 222 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 LytTR#2
126-214 aa · 89 aa · 40.1% of protein
Raw token
LytTR:126:0.00000000293:214:95:98- Raw architecture: Response_reg:24:0.00000000000000472:105:84:111#LytTR:126:0.00000000293:214:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024461195::NZ_JANFZJ010000005.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27650-28318Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE550_03965RefSeq proteinWP_195379753.1
Context group ID
GCF_024461195::NZ_JANFZJ010000005.1::G00048Context members
NE550_RS03935
Partner locus tags
NE550_RS03935
Partner old locus tags
NE550_03965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195379753.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE550_RS03935Primary locus identifier stored in the genes table.
Old locus tagNE550_03965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval27 650-28 318 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 650-28 318 ntGCF_024461195::NZ_JANFZJ010000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461195::NZ_JANFZJ010000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span27 650-28 318 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 650 nt28 318 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE550_RS03935GCF_024461195#NE550_RS03935
RRLytTRCurrent focus
27 650-28 318 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024461195#NE550_RS03935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1658494
Simplified PFAM architecture for RROC_1658494
PFAM domain coverage: 172 / 222 aa (77.5%)
1 aa222 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[21-104] | LytTR[126-213]
- Domain count: 2
- Matched identifier: RROC_1658494
- Positioned domains: Response_reg 21-104 ; LytTR 126-213
Cluster members and taxonomy
Representative gene: GCF_024461195#NE550_RS03935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_024461195
AssemblyASM2446119v1 · Contighaploid
Genome composition3 777 333 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 111 · HK 58 · RR 52CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key