1 HAMP#1
293-362 aa · 70 aa · 11.9% of protein
Raw token
HAMP:293:0.000000012:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE550_RS00305
Histidine kinase, Classic
Blautia faecis · GCF_024461195
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461195#NE550_RS00305Stable P2CS identifier used across views.
GenomeGCF_024461195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 586 aa (43.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-455 aa · 79 aa · 13.5% of protein
Raw token
His_kinase:377:3.11e-28:455:80:803 HATPase_c#3
478-580 aa · 103 aa · 17.6% of protein
Raw token
HATPase_c:478:0.00000000322:580:105:109- Raw architecture: HAMP:293:0.000000012:362:70:69#His_kinase:377:3.11e-28:455:80:80#HATPase_c:478:0.00000000322:580:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461195::NZ_JANFZJ010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62118-64623Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE550_00305RefSeq proteinWP_118580292.1
Context group ID
GCF_024461195::NZ_JANFZJ010000001.1::G00001Context members
NE550_RS00305NE550_RS00310
Partner locus tags
NE550_RS00305NE550_RS00310
Partner old locus tags
NE550_00305NE550_00310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118580292.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE550_RS00305Primary locus identifier stored in the genes table.
Old locus tagNE550_00305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval62 118-63 878 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 118-64 623 ntGCF_024461195::NZ_JANFZJ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461195::NZ_JANFZJ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span62 118-64 623 nt2 506 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 118 nt64 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE550_RS00305GCF_024461195#NE550_RS00305
HKClassicCurrent focus
62 118-63 878 nt · Forward (+)
NE550_RS00310GCF_024461195#NE550_RS00310
RRunclassified
63 871-64 623 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS10615Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132427
Simplified PFAM architecture for HKOC_1132427
PFAM domain coverage: 234 / 586 aa (39.9%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[310-361] | His_kinase[378-455] | HATPase_c[475-578]
- Domain count: 3
- Matched identifier: HKOC_1132427
- Positioned domains: HAMP 310-361 ; His_kinase 378-455 ; HATPase_c 475-578
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS10615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_024461195
AssemblyASM2446119v1 · Contighaploid
Genome composition3 777 333 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 111 · HK 58 · RR 52CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key