1 HisKA#1
318-385 aa · 68 aa · 12.5% of protein
Raw token
HisKA:318:0.00000000000557:385:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE550_RS00650
Histidine kinase, Classic
Blautia faecis · GCF_024461195
ClassHKTypeClassicLength545 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024461195#NE550_RS00650Stable P2CS identifier used across views.
GenomeGCF_024461195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length545 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 545 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa545 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
428-540 aa · 113 aa · 20.7% of protein
Raw token
HATPase_c:428:1.98e-31:540:113:109- Raw architecture: HisKA:318:0.00000000000557:385:68:64#HATPase_c:428:1.98e-31:540:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024461195::NZ_JANFZJ010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129409-131758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE550_00655RefSeq proteinWP_256144017.1
Context group ID
GCF_024461195::NZ_JANFZJ010000001.1::G00005Context members
NE550_RS00645NE550_RS00650
Partner locus tags
NE550_RS00645NE550_RS00650
Partner old locus tags
NE550_00650NE550_00655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256144017.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE550_RS00650Primary locus identifier stored in the genes table.
Old locus tagNE550_00655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval130 121-131 758 nt1 638 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span129 409-131 758 ntGCF_024461195::NZ_JANFZJ010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024461195::NZ_JANFZJ010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span129 409-131 758 nt2 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 409 nt131 758 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE550_RS00645GCF_024461195#NE550_RS00645
RROmpR
129 409-130 128 nt · Reverse (-)
NE550_RS00650GCF_024461195#NE550_RS00650
HKClassicCurrent focus
130 121-131 758 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024461195#NE550_RS00650The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1307863
Simplified PFAM architecture for HKOC_1307863
PFAM domain coverage: 286 / 545 aa (52.5%)
1 aa545 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[48-154] | HisKA[318-385] | HATPase_c[429-539]
- Domain count: 3
- Matched identifier: HKOC_1307863
- Positioned domains: DUF4118 48-154 ; HisKA 318-385 ; HATPase_c 429-539
Cluster members and taxonomy
Representative gene: GCF_024461195#NE550_RS00650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_024461195
AssemblyASM2446119v1 · Contighaploid
Genome composition3 777 333 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 111 · HK 58 · RR 52CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key