1 Response_reg#1
14-125 aa · 112 aa · 22.3% of protein
Raw token
Response_reg:14:0.00000000000000292:125:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS25370
Response regulator RpfG family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeRpfGLength503 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS25370Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length503 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage232 / 503 aa (46.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa503 aa
Domain-by-domain annotation2 items
2 HD#2
318-437 aa · 120 aa · 23.9% of protein
Raw token
HD:318:3.39e-19:437:122:110- Raw architecture: Response_reg:14:0.00000000000000292:125:112:111#HD:318:3.39e-19:437:122:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000355.1::G00081
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23136-26521Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_25495RefSeq proteinWP_276919607.1
Context group ID
GCF_022781285::NZ_JALETP010000355.1::G00081Context members
MR568_RS25370MR568_RS25375
Partner locus tags
MR568_RS25370MR568_RS25375
Partner old locus tags
MR568_25495MR568_25500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276919607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS25370Primary locus identifier stored in the genes table.
Old locus tagMR568_25495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000355.1Sequence record reported by the local genomic context database.
Genomic interval23 136-24 647 nt1 512 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 136-26 521 ntGCF_022781285::NZ_JALETP010000355.1::G00081
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000355.1::G00081Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000355.1All displayed genes belong to this local TCS context.
Neighborhood span23 136-26 521 nt3 386 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 136 nt26 521 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS25370GCF_022781285#MR568_RS25370
RRRpfGCurrent focus
23 136-24 647 nt · Reverse (-)
MR568_RS25375GCF_022781285#MR568_RS25375
HKClassic
24 644-26 521 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS25370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + DUF3369 + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0155441
Simplified PFAM architecture for RROC_0155441
PFAM domain coverage: 424 / 503 aa (84.3%)
1 aa503 aa
Response_regDUF3369HD_5
- Simplified architecture: Response_reg + DUF3369 + HD_5
- Raw architecture: Response_reg[14-121] | DUF3369[126-277] | HD_5[305-468]
- Domain count: 3
- Matched identifier: RROC_0155441
- Positioned domains: Response_reg 14-121 ; DUF3369 126-277 ; HD_5 305-468
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS25370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key