1 Response_reg#1
4-118 aa · 115 aa · 21.3% of protein
Raw token
Response_reg:4:6.64e-29:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS18490
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS18490Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 540 aa (29.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.00000000221:483:42:42- Raw architecture: Response_reg:4:6.64e-29:118:115:111#HTH_AraC:442:0.00000000221:483:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000258.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7404-10880Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_18595RefSeq proteinWP_276917505.1
Context group ID
GCF_022781285::NZ_JALETP010000258.1::G00035Context members
MR568_RS18485MR568_RS18490
Partner locus tags
MR568_RS18485MR568_RS18490
Partner old locus tags
MR568_18590MR568_18595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276917505.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS18490Primary locus identifier stored in the genes table.
Old locus tagMR568_18595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000258.1Sequence record reported by the local genomic context database.
Genomic interval9 258-10 880 nt1 623 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 404-10 880 ntGCF_022781285::NZ_JALETP010000258.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000258.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000258.1All displayed genes belong to this local TCS context.
Neighborhood span7 404-10 880 nt3 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 404 nt10 880 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS18485GCF_022781285#MR568_RS18485
HKClassic
7 404-9 206 nt · Forward (+)
MR568_RS18490GCF_022781285#MR568_RS18490
RRunclassifiedCurrent focus
9 258-10 880 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS18490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0090412
Simplified PFAM architecture for RROC_0090412
PFAM domain coverage: 187 / 540 aa (34.6%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[461-533]
- Domain count: 2
- Matched identifier: RROC_0090412
- Positioned domains: Response_reg 4-117 ; HTH_18 461-533
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS18490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key