1 Response_reg#1
6-116 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:6:6.12e-34:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS16385
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS16385Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:149:9.07e-34:222:77:77- Raw architecture: Response_reg:6:6.12e-34:116:112:111#Trans_reg_C:149:9.07e-34:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000228.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1147-3485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_16490RefSeq proteinWP_035321894.1
Context group ID
GCF_022781285::NZ_JALETP010000228.1::G00034Context members
MR568_RS16380MR568_RS16385
Partner locus tags
MR568_RS16380MR568_RS16385
Partner old locus tags
MR568_16485MR568_16490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_035321894.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3HVS9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3HVS9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS16385Primary locus identifier stored in the genes table.
Old locus tagMR568_16490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000228.1Sequence record reported by the local genomic context database.
Genomic interval2 808-3 485 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 147-3 485 ntGCF_022781285::NZ_JALETP010000228.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000228.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000228.1All displayed genes belong to this local TCS context.
Neighborhood span1 147-3 485 nt2 339 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 147 nt3 485 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS16380GCF_022781285#MR568_RS16380
HKClassic
1 147-2 718 nt · Reverse (-)
MR568_RS16385GCF_022781285#MR568_RS16385
RROmpRCurrent focus
2 808-3 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS11680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466605
Simplified PFAM architecture for RROC_1466605
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1466605
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS11680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key