1 Response_reg#1
54-115 aa · 62 aa · 26.1% of protein
Raw token
Response_reg:54:0.0000000000000201:115:64:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS13120
Response regulator LytTR family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022781285#MR568_RS13120Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 238 aa (64.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:2.57e-17:230:97:98- Raw architecture: Response_reg:54:0.0000000000000201:115:64:111#LytTR:139:2.57e-17:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022781285::NZ_JALETP010000179.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1177-1893Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_13210RefSeq proteinWP_276915984.1
Context group ID
GCF_022781285::NZ_JALETP010000179.1::G00020Context members
MR568_RS13120
Partner locus tags
MR568_RS13120
Partner old locus tags
MR568_13210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276915984.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS13120Primary locus identifier stored in the genes table.
Old locus tagMR568_13210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000179.1Sequence record reported by the local genomic context database.
Genomic interval1 177-1 893 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 177-1 893 ntGCF_022781285::NZ_JALETP010000179.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000179.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000179.1All displayed genes belong to this local TCS context.
Neighborhood span1 177-1 893 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 177 nt1 893 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MR568_RS13120GCF_022781285#MR568_RS13120
RRLytTRCurrent focus
1 177-1 893 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS13120The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0948868
Simplified PFAM architecture for RROC_0948868
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-230]
- Domain count: 2
- Matched identifier: RROC_0948868
- Positioned domains: Response_reg 4-116 ; LytTR 140-230
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS13120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key