1 Response_reg#1
4-117 aa · 114 aa · 23.3% of protein
Raw token
Response_reg:4:8.48e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS07915
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeunclassifiedLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS07915Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 490 aa (29.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
452-482 aa · 31 aa · 6.3% of protein
Raw token
HTH_AraC:452:0.000000351:482:31:42- Raw architecture: Response_reg:4:8.48e-28:117:114:111#HTH_AraC:452:0.000000351:482:31:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000102.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15125-18516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_07970RefSeq proteinWP_276914469.1
Context group ID
GCF_022781285::NZ_JALETP010000102.1::G00060Context members
MR568_RS07915MR568_RS07920
Partner locus tags
MR568_RS07915MR568_RS07920
Partner old locus tags
MR568_07970MR568_07975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276914469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS07915Primary locus identifier stored in the genes table.
Old locus tagMR568_07970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000102.1Sequence record reported by the local genomic context database.
Genomic interval15 125-16 597 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 125-18 516 ntGCF_022781285::NZ_JALETP010000102.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000102.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000102.1All displayed genes belong to this local TCS context.
Neighborhood span15 125-18 516 nt3 392 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 125 nt18 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS07915GCF_022781285#MR568_RS07915
RRunclassifiedCurrent focus
15 125-16 597 nt · Reverse (-)
MR568_RS07920GCF_022781285#MR568_RS07920
HKClassic
16 657-18 516 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS07915The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0169164
Simplified PFAM architecture for RROC_0169164
PFAM domain coverage: 189 / 490 aa (38.6%)
1 aa490 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[410-484]
- Domain count: 2
- Matched identifier: RROC_0169164
- Positioned domains: Response_reg 4-117 ; HTH_18 410-484
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS07915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key