1 Response_reg#1
11-120 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:11:3.94e-32:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS06455
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS06455Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:157:4.41e-29:233:77:77- Raw architecture: Response_reg:11:3.94e-32:120:111:111#Trans_reg_C:157:4.41e-29:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000083.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21606-23449Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_06510RefSeq proteinWP_154463978.1
Context group ID
GCF_022781285::NZ_JALETP010000083.1::G00019Context members
MR568_RS06450MR568_RS06455
Partner locus tags
MR568_RS06450MR568_RS06455
Partner old locus tags
MR568_06505MR568_06510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463978.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WES8Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WES8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS06455Primary locus identifier stored in the genes table.
Old locus tagMR568_06510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000083.1Sequence record reported by the local genomic context database.
Genomic interval22 742-23 449 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 606-23 449 ntGCF_022781285::NZ_JALETP010000083.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000083.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000083.1All displayed genes belong to this local TCS context.
Neighborhood span21 606-23 449 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 606 nt23 449 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS06450GCF_022781285#MR568_RS06450
HKClassic
21 606-22 745 nt · Forward (+)
MR568_RS06455GCF_022781285#MR568_RS06455
RROmpRCurrent focus
22 742-23 449 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS06640Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1027188
Simplified PFAM architecture for RROC_1027188
PFAM domain coverage: 187 / 235 aa (79.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_1027188
- Positioned domains: Response_reg 11-120 ; Response_reg 11-120 ; Trans_reg_C 157-233 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS06640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key