1 PAS_3#1
62-144 aa · 83 aa · 6.2% of protein
Raw token
PAS_3:62:0.000000000901:144:83:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS06410
Histidine kinase, Hybrid
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeHybridLength1330 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS06410Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1330 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage510 / 1330 aa (38.3%)Merged over positioned domains only.
Domain description3 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1330 aa
Domain-by-domain annotation6 items
2 PAS_3#2
187-258 aa · 72 aa · 5.4% of protein
Raw token
PAS_3:187:0.000000000000196:258:72:893 PAS_3#3
455-513 aa · 59 aa · 4.4% of protein
Raw token
PAS_3:455:0.00000295:513:61:894 HisKA#4
941-1006 aa · 66 aa · 5.0% of protein
Raw token
HisKA:941:2.43e-17:1006:66:645 HATPase_c#5
1054-1167 aa · 114 aa · 8.6% of protein
Raw token
HATPase_c:1054:6.69e-32:1167:114:1096 Response_reg#6
1202-1317 aa · 116 aa · 8.7% of protein
Raw token
Response_reg:1202:1.09e-23:1317:116:111- Raw architecture: PAS_3:62:0.000000000901:144:83:89#PAS_3:187:0.000000000000196:258:72:89#PAS_3:455:0.00000295:513:61:89#HisKA:941:2.43e-17:1006:66:64#HATPase_c:1054:6.69e-32:1167:114:109#Response_reg:1202:1.09e-23:1317:116:111
- Domain description: 3 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000083.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8623-15223Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_06465RefSeq proteinWP_276914174.1
Context group ID
GCF_022781285::NZ_JALETP010000083.1::G00018Context members
MR568_RS06405MR568_RS06410
Partner locus tags
MR568_RS06405MR568_RS06410
Partner old locus tags
MR568_06460MR568_06465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276914174.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS06410Primary locus identifier stored in the genes table.
Old locus tagMR568_06465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000083.1Sequence record reported by the local genomic context database.
Genomic interval11 231-15 223 nt3 993 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 623-15 223 ntGCF_022781285::NZ_JALETP010000083.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000083.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000083.1All displayed genes belong to this local TCS context.
Neighborhood span8 623-15 223 nt6 601 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 623 nt15 223 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS06405GCF_022781285#MR568_RS06405
RRPleD_VieA
8 623-11 214 nt · Forward (+)
MR568_RS06410GCF_022781285#MR568_RS06410
HKHybridCurrent focus
11 231-15 223 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS06410The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0109044
Simplified PFAM architecture for HKOC_0109044
PFAM domain coverage: 532 / 1330 aa (40.0%)
1 aa1330 aa
PAS_3PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[62-143] | PAS_3[187-258] | PAS_3[428-510] | HisKA[941-1006] | HATPase_c[1054-1167] | Response_reg[1202-1316]
- Domain count: 6
- Matched identifier: HKOC_0109044
- Positioned domains: PAS_3 62-143 ; PAS_3 187-258 ; PAS_3 428-510 ; HisKA 941-1006 ; HATPase_c 1054-1167 ; Response_reg 1202-1316
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS06410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key