1 Response_reg#1
7-120 aa · 114 aa · 13.2% of protein
Raw token
Response_reg:7:1.62e-26:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS06405
Response regulator, PleD_VieA family
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypePleD_VieALength863 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS06405Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length863 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage735 / 863 aa (85.2%)Merged over positioned domains only.
Domain description2 Response_reg,2 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa863 aa
Domain-by-domain annotation5 items
2 GGDEF#2
137-274 aa · 138 aa · 16.0% of protein
Raw token
GGDEF:137:0.000000000000002:274:152:1603 EAL#3
309-539 aa · 231 aa · 26.8% of protein
Raw token
EAL:309:5.25e-71:539:231:2354 Response_reg#4
576-677 aa · 102 aa · 11.8% of protein
Raw token
Response_reg:576:0.0000000149:677:104:1115 GGDEF#5
707-856 aa · 150 aa · 17.4% of protein
Raw token
GGDEF:707:5.39e-37:856:160:160- Raw architecture: Response_reg:7:1.62e-26:120:115:111#GGDEF:137:0.000000000000002:274:152:160#EAL:309:5.25e-71:539:231:235#Response_reg:576:0.0000000149:677:104:111#GGDEF:707:5.39e-37:856:160:160
- Domain description: 2 Response_reg,2 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000083.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8623-15223Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_06460RefSeq proteinWP_276914172.1
Context group ID
GCF_022781285::NZ_JALETP010000083.1::G00018Context members
MR568_RS06405MR568_RS06410
Partner locus tags
MR568_RS06405MR568_RS06410
Partner old locus tags
MR568_06460MR568_06465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276914172.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS06405Primary locus identifier stored in the genes table.
Old locus tagMR568_06460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000083.1Sequence record reported by the local genomic context database.
Genomic interval8 623-11 214 nt2 592 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 623-15 223 ntGCF_022781285::NZ_JALETP010000083.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000083.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000083.1All displayed genes belong to this local TCS context.
Neighborhood span8 623-15 223 nt6 601 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 623 nt15 223 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS06405GCF_022781285#MR568_RS06405
RRPleD_VieACurrent focus
8 623-11 214 nt · Forward (+)
MR568_RS06410GCF_022781285#MR568_RS06410
HKHybrid
11 231-15 223 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS06405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL + Response_reg + GGDEF5 domains in the representative PFAM annotation.
PFAM architecture for RROC_0012041
Simplified PFAM architecture for RROC_0012041
PFAM domain coverage: 746 / 863 aa (86.4%)
1 aa863 aa
Response_regGGDEFEALResponse_regGGDEF
- Simplified architecture: Response_reg + GGDEF + EAL + Response_reg + GGDEF
- Raw architecture: Response_reg[7-119] | GGDEF[136-278] | EAL[308-539] | Response_reg[576-685] | GGDEF[707-854]
- Domain count: 5
- Matched identifier: RROC_0012041
- Positioned domains: Response_reg 7-119 ; GGDEF 136-278 ; EAL 308-539 ; Response_reg 576-685 ; GGDEF 707-854
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS06405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key