1 HAMP#1
287-359 aa · 73 aa · 12.6% of protein
Raw token
HAMP:287:0.000000000667:359:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS03925
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022781285#MR568_RS03925Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 580 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
374-453 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:374:7.4e-28:453:80:803 HATPase_c#3
471-577 aa · 107 aa · 18.4% of protein
Raw token
HATPase_c:471:0.000000843:577:109:109- Raw architecture: HAMP:287:0.000000000667:359:73:69#His_kinase:374:7.4e-28:453:80:80#HATPase_c:471:0.000000843:577:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022781285::NZ_JALETP010000051.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span25883-27625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_03945RefSeq proteinWP_154464351.1
Context group ID
GCF_022781285::NZ_JALETP010000051.1::G00024Context members
MR568_RS03925
Partner locus tags
MR568_RS03925
Partner old locus tags
MR568_03945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464351.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WG27Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WG27_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS03925Primary locus identifier stored in the genes table.
Old locus tagMR568_03945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000051.1Sequence record reported by the local genomic context database.
Genomic interval25 883-27 625 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 883-27 625 ntGCF_022781285::NZ_JALETP010000051.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000051.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000051.1All displayed genes belong to this local TCS context.
Neighborhood span25 883-27 625 nt1 743 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 883 nt27 625 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MR568_RS03925GCF_022781285#MR568_RS03925
HKClassicCurrent focus
25 883-27 625 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS09095Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163778
Simplified PFAM architecture for HKOC_1163778
PFAM domain coverage: 128 / 580 aa (22.1%)
1 aa580 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[312-359] | His_kinase[374-453]
- Domain count: 2
- Matched identifier: HKOC_1163778
- Positioned domains: HAMP 312-359 ; His_kinase 374-453
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS09095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key