1 Response_reg#1
4-115 aa · 112 aa · 20.6% of protein
Raw token
Response_reg:4:4.3e-24:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS03890
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_022781285
ClassRRTypeunclassifiedLength544 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022781285#MR568_RS03890Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length544 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 544 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa544 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-485 aa · 42 aa · 7.7% of protein
Raw token
HTH_AraC:444:0.0000000129:485:42:423 HTH_AraC#3
497-534 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:497:0.000000416:534:38:42- Raw architecture: Response_reg:4:4.3e-24:115:114:111#HTH_AraC:444:0.0000000129:485:42:42#HTH_AraC:497:0.000000416:534:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022781285::NZ_JALETP010000051.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16377-18011Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_03910RefSeq proteinWP_276913593.1
Context group ID
GCF_022781285::NZ_JALETP010000051.1::G00023Context members
MR568_RS03890
Partner locus tags
MR568_RS03890
Partner old locus tags
MR568_03910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276913593.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS03890Primary locus identifier stored in the genes table.
Old locus tagMR568_03910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000051.1Sequence record reported by the local genomic context database.
Genomic interval16 377-18 011 nt1 635 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 377-18 011 ntGCF_022781285::NZ_JALETP010000051.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000051.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000051.1All displayed genes belong to this local TCS context.
Neighborhood span16 377-18 011 nt1 635 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 377 nt18 011 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MR568_RS03890GCF_022781285#MR568_RS03890
RRunclassifiedCurrent focus
16 377-18 011 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS03890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0082873
Simplified PFAM architecture for RROC_0082873
PFAM domain coverage: 190 / 544 aa (34.9%)
1 aa544 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[457-535]
- Domain count: 2
- Matched identifier: RROC_0082873
- Positioned domains: Response_reg 4-114 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS03890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key