1 HAMP#1
197-265 aa · 69 aa · 13.9% of protein
Raw token
HAMP:197:0.0000104:265:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS03515
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS03515Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 496 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-335 aa · 66 aa · 13.3% of protein
Raw token
HisKA:270:0.00000000000015:335:66:643 HATPase_c#3
383-493 aa · 111 aa · 22.4% of protein
Raw token
HATPase_c:383:1.88e-31:493:111:109- Raw architecture: HAMP:197:0.0000104:265:69:69#HisKA:270:0.00000000000015:335:66:64#HATPase_c:383:1.88e-31:493:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000045.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28590-30821Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_03535RefSeq proteinWP_154464906.1
Context group ID
GCF_022781285::NZ_JALETP010000045.1::G00028Context members
MR568_RS03510MR568_RS03515
Partner locus tags
MR568_RS03510MR568_RS03515
Partner old locus tags
MR568_03530MR568_03535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464906.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WF52Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WF52_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS03515Primary locus identifier stored in the genes table.
Old locus tagMR568_03535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000045.1Sequence record reported by the local genomic context database.
Genomic interval29 331-30 821 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 590-30 821 ntGCF_022781285::NZ_JALETP010000045.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000045.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000045.1All displayed genes belong to this local TCS context.
Neighborhood span28 590-30 821 nt2 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 590 nt30 821 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS03510GCF_022781285#MR568_RS03510
RROmpR
28 590-29 279 nt · Forward (+)
MR568_RS03515GCF_022781285#MR568_RS03515
HKClassicCurrent focus
29 331-30 821 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS12610Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1500421
Simplified PFAM architecture for HKOC_1500421
PFAM domain coverage: 177 / 496 aa (35.7%)
1 aa496 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[270-335] | HATPase_c[383-493]
- Domain count: 2
- Matched identifier: HKOC_1500421
- Positioned domains: HisKA 270-335 ; HATPase_c 383-493
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS12610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key