1 HAMP#1
152-219 aa · 68 aa · 15.1% of protein
Raw token
HAMP:152:0.0000151:219:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS02850
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS02850Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 449 aa (53.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-295 aa · 66 aa · 14.7% of protein
Raw token
HisKA:230:0.0000000236:295:66:643 HATPase_c#3
343-447 aa · 105 aa · 23.4% of protein
Raw token
HATPase_c:343:8.82e-17:447:105:109- Raw architecture: HAMP:152:0.0000151:219:70:69#HisKA:230:0.0000000236:295:66:64#HATPase_c:343:8.82e-17:447:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000039.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span57615-59614Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_02865RefSeq proteinWP_276913339.1
Context group ID
GCF_022781285::NZ_JALETP010000039.1::G00068Context members
MR568_RS02845MR568_RS02850
Partner locus tags
MR568_RS02845MR568_RS02850
Partner old locus tags
MR568_02860MR568_02865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276913339.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS02850Primary locus identifier stored in the genes table.
Old locus tagMR568_02865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000039.1Sequence record reported by the local genomic context database.
Genomic interval58 265-59 614 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span57 615-59 614 ntGCF_022781285::NZ_JALETP010000039.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000039.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000039.1All displayed genes belong to this local TCS context.
Neighborhood span57 615-59 614 nt2 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 615 nt59 614 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS02845GCF_022781285#MR568_RS02845
RROmpR
57 615-58 286 nt · Forward (+)
MR568_RS02850GCF_022781285#MR568_RS02850
HKClassicCurrent focus
58 265-59 614 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS02850The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1981216
Simplified PFAM architecture for HKOC_1981216
PFAM domain coverage: 163 / 449 aa (36.3%)
1 aa449 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-292] | HATPase_c[343-446]
- Domain count: 2
- Matched identifier: HKOC_1981216
- Positioned domains: HisKA 234-292 ; HATPase_c 343-446
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS02850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key