1 HAMP#1
252-324 aa · 73 aa · 13.3% of protein
Raw token
HAMP:252:0.000000000000251:324:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR568_RS01075
Histidine kinase, Classic
Eisenbergiella massiliensis · GCF_022781285
ClassHKTypeClassicLength548 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022781285#MR568_RS01075Stable P2CS identifier used across views.
GenomeGCF_022781285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 548 aa (45.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation3 items
2 His_kinase#2
344-420 aa · 77 aa · 14.1% of protein
Raw token
His_kinase:344:1.8e-20:420:77:803 HATPase_c#3
439-538 aa · 100 aa · 18.2% of protein
Raw token
HATPase_c:439:0.00000000015:538:104:109- Raw architecture: HAMP:252:0.000000000000251:324:73:69#His_kinase:344:1.8e-20:420:77:80#HATPase_c:439:0.00000000015:538:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022781285::NZ_JALETP010000018.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3852-6775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMR568_01080RefSeq proteinWP_276912930.1
Context group ID
GCF_022781285::NZ_JALETP010000018.1::G00012Context members
MR568_RS01070MR568_RS01075
Partner locus tags
MR568_RS01070MR568_RS01075
Partner old locus tags
MR568_01075MR568_01080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276912930.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR568_RS01075Primary locus identifier stored in the genes table.
Old locus tagMR568_01080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALETP010000018.1Sequence record reported by the local genomic context database.
Genomic interval5 129-6 775 nt1 647 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 852-6 775 ntGCF_022781285::NZ_JALETP010000018.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022781285::NZ_JALETP010000018.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALETP010000018.1All displayed genes belong to this local TCS context.
Neighborhood span3 852-6 775 nt2 924 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 852 nt6 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR568_RS01070GCF_022781285#MR568_RS01070
RRunclassified
3 852-5 132 nt · Reverse (-)
MR568_RS01075GCF_022781285#MR568_RS01075
HKClassicCurrent focus
5 129-6 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS01075The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1300163
Simplified PFAM architecture for HKOC_1300163
PFAM domain coverage: 227 / 548 aa (41.4%)
1 aa548 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[276-324] | His_kinase[344-420] | HATPase_c[439-539]
- Domain count: 3
- Matched identifier: HKOC_1300163
- Positioned domains: HAMP 276-324 ; His_kinase 344-420 ; HATPase_c 439-539
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS01075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_022781285
AssemblyASM2278128v1 · Contighaploid
Genome composition5 340 195 bp · 48,5% GCEisenbergiella massiliensis
Signal transduction countsGenes 161 · HK 74 · RR 79CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key