1 HAMP#1
181-251 aa · 71 aa · 14.8% of protein
Raw token
HAMP:181:0.000000000000083:251:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS04765
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_020861855
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS04765Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 479 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
255-321 aa · 67 aa · 14.0% of protein
Raw token
HisKA:255:0.0000000000656:321:67:643 HATPase_c#3
376-476 aa · 101 aa · 21.1% of protein
Raw token
HATPase_c:376:0.0000000000474:476:101:109- Raw architecture: HAMP:181:0.000000000000083:251:71:69#HisKA:255:0.0000000000656:321:67:64#HATPase_c:376:0.0000000000474:476:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1120082-1122183Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_04750RefSeq proteinWP_229041892.1
Context group ID
GCF_020861855::NZ_JAJHZI010000001.1::G00008Context members
LLJ07_RS04760LLJ07_RS04765
Partner locus tags
LLJ07_RS04760LLJ07_RS04765
Partner old locus tags
LLJ07_04745LLJ07_04750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_229041892.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS04765Primary locus identifier stored in the genes table.
Old locus tagLLJ07_04750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 120 744-1 122 183 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 120 082-1 122 183 ntGCF_020861855::NZ_JAJHZI010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 120 082-1 122 183 nt2 102 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 120 082 nt1 122 183 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS04760GCF_020861855#LLJ07_RS04760
RROmpR
1 120 082-1 120 747 nt · Forward (+)
LLJ07_RS04765GCF_020861855#LLJ07_RS04765
HKClassicCurrent focus
1 120 744-1 122 183 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020861855#LLJ07_RS04765The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1632424
Simplified PFAM architecture for HKOC_1632424
PFAM domain coverage: 220 / 479 aa (45.9%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-250] | HisKA[256-321] | HATPase_c[374-475]
- Domain count: 3
- Matched identifier: HKOC_1632424
- Positioned domains: HAMP 199-250 ; HisKA 256-321 ; HATPase_c 374-475
Cluster members and taxonomy
Representative gene: GCF_020861855#LLJ07_RS04765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key