1 HisKA_3#1
194-257 aa · 64 aa · 15.0% of protein
Raw token
HisKA_3:194:3.7e-16:257:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS03740
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_020861855
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS03740Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 427 aa (37.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
304-397 aa · 94 aa · 22.0% of protein
Raw token
HATPase_c:304:0.0000000121:397:101:109- Raw architecture: HisKA_3:194:3.7e-16:257:64:68#HATPase_c:304:0.0000000121:397:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span901467-903439Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_03725RefSeq proteinWP_061870565.1
Context group ID
GCF_020861855::NZ_JAJHZI010000001.1::G00006Context members
LLJ07_RS03735LLJ07_RS03740
Partner locus tags
LLJ07_RS03735LLJ07_RS03740
Partner old locus tags
LLJ07_03720LLJ07_03725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061870565.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS03740Primary locus identifier stored in the genes table.
Old locus tagLLJ07_03725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000001.1Sequence record reported by the local genomic context database.
Genomic interval902 156-903 439 nt1 284 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span901 467-903 439 ntGCF_020861855::NZ_JAJHZI010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span901 467-903 439 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
901 467 nt903 439 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS03735GCF_020861855#LLJ07_RS03735
RRNarL
901 467-902 159 nt · Reverse (-)
LLJ07_RS03740GCF_020861855#LLJ07_RS03740
HKClassicCurrent focus
902 156-903 439 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS01585Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2200145
Simplified PFAM architecture for HKOC_2200145
PFAM domain coverage: 66 / 427 aa (15.5%)
1 aa427 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[194-259]
- Domain count: 1
- Matched identifier: HKOC_2200145
- Positioned domains: HisKA_3 194-259
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS01585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key