1 Response_reg#1
3-106 aa · 104 aa · 45.2% of protein
Raw token
Response_reg:3:1.45e-22:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS03735
Response regulator NarL family
Bifidobacterium bifidum · GCF_020861855
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS03735Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 230 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-223 aa · 56 aa · 24.3% of protein
Raw token
HTH_LUXR:168:7.91e-19:223:56:58- Raw architecture: Response_reg:3:1.45e-22:106:104:111#HTH_LUXR:168:7.91e-19:223:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span901467-903439Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_03720RefSeq proteinWP_003817355.1
Context group ID
GCF_020861855::NZ_JAJHZI010000001.1::G00006Context members
LLJ07_RS03735LLJ07_RS03740
Partner locus tags
LLJ07_RS03735LLJ07_RS03740
Partner old locus tags
LLJ07_03720LLJ07_03725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003817355.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS03735Primary locus identifier stored in the genes table.
Old locus tagLLJ07_03720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000001.1Sequence record reported by the local genomic context database.
Genomic interval901 467-902 159 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span901 467-903 439 ntGCF_020861855::NZ_JAJHZI010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span901 467-903 439 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
901 467 nt903 439 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS03735GCF_020861855#LLJ07_RS03735
RRNarLCurrent focus
901 467-902 159 nt · Reverse (-)
LLJ07_RS03740GCF_020861855#LLJ07_RS03740
HKClassic
902 156-903 439 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164965#BBIF_RS04015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200290
Simplified PFAM architecture for RROC_1200290
PFAM domain coverage: 159 / 230 aa (69.1%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1200290
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 170-223 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_000164965#BBIF_RS04015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key