1 SBP_bac_3#1
56-273 aa · 218 aa · 32.2% of protein
Raw token
SBP_bac_3:56:1.89e-47:273:224:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS15680
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength677 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS15680Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length677 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage391 / 677 aa (57.8%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa677 aa
Domain-by-domain annotation3 items
2 HisKA#2
457-522 aa · 66 aa · 9.7% of protein
Raw token
HisKA:457:0.000000000000245:522:66:643 HATPase_c#3
565-671 aa · 107 aa · 15.8% of protein
Raw token
HATPase_c:565:2.11e-26:671:108:109- Raw architecture: SBP_bac_3:56:1.89e-47:273:224:224#HisKA:457:0.000000000000245:522:66:64#HATPase_c:565:2.11e-26:671:108:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000005.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145279-148671Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_15585RefSeq proteinWP_228106014.1
Context group ID
GCF_020748465::NZ_JAHZMP010000005.1::G00048Context members
K0039_RS15675K0039_RS15680
Partner locus tags
K0039_RS15675K0039_RS15680
Partner old locus tags
K0039_15580K0039_15585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106014.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q7D7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q7D7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS15680Primary locus identifier stored in the genes table.
Old locus tagK0039_15585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000005.1Sequence record reported by the local genomic context database.
Genomic interval146 638-148 671 nt2 034 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span145 279-148 671 ntGCF_020748465::NZ_JAHZMP010000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000005.1All displayed genes belong to this local TCS context.
Neighborhood span145 279-148 671 nt3 393 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 279 nt148 671 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS15675GCF_020748465#K0039_RS15675
RRNtrC
145 279-146 637 nt · Reverse (-)
K0039_RS15680GCF_020748465#K0039_RS15680
HKClassicCurrent focus
146 638-148 671 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS15680The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0826352
Simplified PFAM architecture for HKOC_0826352
PFAM domain coverage: 390 / 677 aa (57.6%)
1 aa677 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[56-273] | HisKA[459-522] | HATPase_c[566-673]
- Domain count: 3
- Matched identifier: HKOC_0826352
- Positioned domains: SBP_bac_3 56-273 ; HisKA 459-522 ; HATPase_c 566-673
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS15680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key