1 HAMP#1
155-225 aa · 71 aa · 15.8% of protein
Raw token
HAMP:155:0.0000000104:225:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS00295
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS00295Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 449 aa (55.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
229-296 aa · 68 aa · 15.1% of protein
Raw token
HisKA:229:1.25e-16:296:68:643 HATPase_c#3
342-449 aa · 108 aa · 24.1% of protein
Raw token
HATPase_c:342:4.59e-24:449:108:109- Raw architecture: HAMP:155:0.0000000104:225:71:69#HisKA:229:1.25e-16:296:68:64#HATPase_c:342:4.59e-24:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42620-44633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_00285RefSeq proteinWP_228103063.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00008Context members
K0039_RS00295K0039_RS00300
Partner locus tags
K0039_RS00295K0039_RS00300
Partner old locus tags
K0039_00285K0039_00290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228103063.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS00295Primary locus identifier stored in the genes table.
Old locus tagK0039_00285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval42 620-43 969 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 620-44 633 ntGCF_020748465::NZ_JAHZMP010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span42 620-44 633 nt2 014 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 620 nt44 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS00295GCF_020748465#K0039_RS00295
HKClassicCurrent focus
42 620-43 969 nt · Reverse (-)
K0039_RS00300GCF_020748465#K0039_RS00300
RROmpR
43 971-44 633 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS00295The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1980860
Simplified PFAM architecture for HKOC_1980860
PFAM domain coverage: 174 / 449 aa (38.8%)
1 aa449 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[229-296] | HATPase_c[343-448]
- Domain count: 2
- Matched identifier: HKOC_1980860
- Positioned domains: HisKA 229-296 ; HATPase_c 343-448
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS00295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key