1 HAMP#1
176-245 aa · 70 aa · 14.7% of protein
Raw token
HAMP:176:0.000000000000165:245:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS01885
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS01885Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 476 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-316 aa · 65 aa · 13.7% of protein
Raw token
HisKA:252:2.94e-17:316:65:643 HATPase_c#3
364-469 aa · 106 aa · 22.3% of protein
Raw token
HATPase_c:364:1.95e-30:469:107:109- Raw architecture: HAMP:176:0.000000000000165:245:70:69#HisKA:252:2.94e-17:316:65:64#HATPase_c:364:1.95e-30:469:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span372933-375065Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_01865RefSeq proteinWP_228103367.1
Context group ID
GCF_020748465::NZ_JAHZMP010000001.1::G00012Context members
K0039_RS01885K0039_RS01890
Partner locus tags
K0039_RS01885K0039_RS01890
Partner old locus tags
K0039_01865K0039_01870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103367.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PZQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PZQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS01885Primary locus identifier stored in the genes table.
Old locus tagK0039_01865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000001.1Sequence record reported by the local genomic context database.
Genomic interval372 933-374 363 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span372 933-375 065 ntGCF_020748465::NZ_JAHZMP010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span372 933-375 065 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
372 933 nt375 065 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS01885GCF_020748465#K0039_RS01885
HKClassicCurrent focus
372 933-374 363 nt · Reverse (-)
K0039_RS01890GCF_020748465#K0039_RS01890
RROmpR
374 367-375 065 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS01885The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1659653
Simplified PFAM architecture for HKOC_1659653
PFAM domain coverage: 222 / 476 aa (46.6%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-245] | HisKA[252-315] | HATPase_c[364-470]
- Domain count: 3
- Matched identifier: HKOC_1659653
- Positioned domains: HAMP 195-245 ; HisKA 252-315 ; HATPase_c 364-470
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS01885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key