1 HisKA#1
318-384 aa · 67 aa · 12.4% of protein
Raw token
HisKA:318:0.0000000000000028:384:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS13770
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS13770Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 539 aa (29.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
431-522 aa · 92 aa · 17.1% of protein
Raw token
HATPase_c:431:0.000000117:522:96:109- Raw architecture: HisKA:318:0.0000000000000028:384:67:64#HATPase_c:431:0.000000117:522:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000004.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26864-29177Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_13690RefSeq proteinWP_228105652.1
Context group ID
GCF_020748465::NZ_JAHZMP010000004.1::G00046Context members
K0039_RS13765K0039_RS13770
Partner locus tags
K0039_RS13765K0039_RS13770
Partner old locus tags
K0039_13685K0039_13690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105652.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q4Y3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q4Y3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS13770Primary locus identifier stored in the genes table.
Old locus tagK0039_13690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000004.1Sequence record reported by the local genomic context database.
Genomic interval27 558-29 177 nt1 620 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 864-29 177 ntGCF_020748465::NZ_JAHZMP010000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span26 864-29 177 nt2 314 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 864 nt29 177 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS13765GCF_020748465#K0039_RS13765
RROmpR
26 864-27 586 nt · Forward (+)
K0039_RS13770GCF_020748465#K0039_RS13770
HKClassicCurrent focus
27 558-29 177 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS13770The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1325363
Simplified PFAM architecture for HKOC_1325363
PFAM domain coverage: 201 / 539 aa (37.3%)
1 aa539 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[264-305] | HisKA[318-384] | HATPase_c[431-522]
- Domain count: 3
- Matched identifier: HKOC_1325363
- Positioned domains: HAMP 264-305 ; HisKA 318-384 ; HATPase_c 431-522
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS13770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key