1 HisKA#1
117-170 aa · 54 aa · 16.6% of protein
Raw token
HisKA:117:0.0000375:170:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS08005
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength326 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS08005Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length326 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 326 aa (50.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa326 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-325 aa · 110 aa · 33.7% of protein
Raw token
HATPase_c:216:6.05e-18:325:110:109- Raw architecture: HisKA:117:0.0000375:170:59:64#HATPase_c:216:6.05e-18:325:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000002.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span332045-333726Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_07945RefSeq proteinWP_228104526.1
Context group ID
GCF_020748465::NZ_JAHZMP010000002.1::G00027Context members
K0039_RS08000K0039_RS08005
Partner locus tags
K0039_RS08000K0039_RS08005
Partner old locus tags
K0039_07940K0039_07945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228104526.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PX60Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PX60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS08005Primary locus identifier stored in the genes table.
Old locus tagK0039_07945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000002.1Sequence record reported by the local genomic context database.
Genomic interval332 746-333 726 nt981 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span332 045-333 726 ntGCF_020748465::NZ_JAHZMP010000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span332 045-333 726 nt1 682 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
332 045 nt333 726 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS08000GCF_020748465#K0039_RS08000
RROmpR
332 045-332 737 nt · Forward (+)
K0039_RS08005GCF_020748465#K0039_RS08005
HKClassicCurrent focus
332 746-333 726 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS08005The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2863415
Simplified PFAM architecture for HKOC_2863415
PFAM domain coverage: 109 / 326 aa (33.4%)
1 aa326 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2863415
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS08005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key