1 HisKA#1
130-179 aa · 50 aa · 14.8% of protein
Raw token
HisKA:130:0.0000401:179:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ97_RS03630
Histidine kinase, Classic
Blautia obeum · GCF_020557905
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557905#LIZ97_RS03630Stable P2CS identifier used across views.
GenomeGCF_020557905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 337 aa (47.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
225-333 aa · 109 aa · 32.3% of protein
Raw token
HATPase_c:225:8.49e-20:333:109:109- Raw architecture: HisKA:130:0.0000401:179:53:64#HATPase_c:225:8.49e-20:333:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557905::NZ_JAJCJV010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219790-221538Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ97_03630RefSeq proteinWP_227080750.1
Context group ID
GCF_020557905::NZ_JAJCJV010000003.1::G00030Context members
LIZ97_RS03625LIZ97_RS03630
Partner locus tags
LIZ97_RS03625LIZ97_RS03630
Partner old locus tags
LIZ97_03625LIZ97_03630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_227080750.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0C188Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0C188_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ97_RS03630Primary locus identifier stored in the genes table.
Old locus tagLIZ97_03630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJV010000003.1Sequence record reported by the local genomic context database.
Genomic interval220 525-221 538 nt1 014 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 790-221 538 ntGCF_020557905::NZ_JAJCJV010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557905::NZ_JAJCJV010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span219 790-221 538 nt1 749 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 790 nt221 538 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ97_RS03625GCF_020557905#LIZ97_RS03625
RROmpR
219 790-220 473 nt · Forward (+)
LIZ97_RS03630GCF_020557905#LIZ97_RS03630
HKClassicCurrent focus
220 525-221 538 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557905#LIZ97_RS03630The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2845413
Simplified PFAM architecture for HKOC_2845413
PFAM domain coverage: 109 / 337 aa (32.3%)
1 aa337 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[225-333]
- Domain count: 1
- Matched identifier: HKOC_2845413
- Positioned domains: HATPase_c 225-333
Cluster members and taxonomy
Representative gene: GCF_020557905#LIZ97_RS03630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_020557905
AssemblyASM2055790v1 · Contighaploid
Genome composition3 926 727 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 101 · HK 51 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key