1 Response_reg#1
7-110 aa · 104 aa · 20.7% of protein
Raw token
Response_reg:7:1.37e-28:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ97_RS00020
Response regulator RpfG family
Blautia obeum · GCF_020557905
ClassRRTypeRpfGLength502 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_020557905#LIZ97_RS00020Stable P2CS identifier used across views.
GenomeGCF_020557905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 502 aa (42.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 21.3% of protein
Raw token
HD:193:0.0000000000000121:299:107:110- Raw architecture: Response_reg:7:1.37e-28:110:105:111#HD:193:0.0000000000000121:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_020557905::NZ_JAJCJV010000001.1::G00001
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span1583-8400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ97_00020RefSeq proteinWP_117638286.1
Context group ID
GCF_020557905::NZ_JAJCJV010000001.1::G00001Context members
LIZ97_RS00010LIZ97_RS00015LIZ97_RS00020
Partner locus tags
LIZ97_RS00010LIZ97_RS00015LIZ97_RS00020
Partner old locus tags
LIZ97_00010LIZ97_00015LIZ97_00020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117638286.1Primary protein accession used for annex mappings.
UniProt accessionA0A414K4N9Primary UniProt accession resolved in the annex database.
UniProt IDA0A414K4N9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ97_RS00020Primary locus identifier stored in the genes table.
Old locus tagLIZ97_00020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJV010000001.1Sequence record reported by the local genomic context database.
Genomic interval6 892-8 400 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 583-8 400 ntGCF_020557905::NZ_JAJCJV010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557905::NZ_JAJCJV010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 583-8 400 nt6 818 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 583 nt8 400 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
LIZ97_RS00010GCF_020557905#LIZ97_RS00010
HKHybrid
1 583-3 748 nt · Forward (+)
LIZ97_RS00015GCF_020557905#LIZ97_RS00015
HKHybrid
4 012-6 840 nt · Forward (+)
LIZ97_RS00020GCF_020557905#LIZ97_RS00020
RRRpfGCurrent focus
6 892-8 400 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS00020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0156163
Simplified PFAM architecture for RROC_0156163
PFAM domain coverage: 247 / 502 aa (49.2%)
1 aa502 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[185-320]
- Domain count: 2
- Matched identifier: RROC_0156163
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 185-320 ; HD_5 185-320
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS00020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_020557905
AssemblyASM2055790v1 · Contighaploid
Genome composition3 926 727 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 101 · HK 51 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key