1 GGDEF#1
198-348 aa · 151 aa · 14.3% of protein
Raw token
GGDEF:198:7.87e-21:348:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ97_RS00595
Histidine kinase, Hybrid
Blautia obeum · GCF_020557905
ClassHKTypeHybridLength1056 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557905#LIZ97_RS00595Stable P2CS identifier used across views.
GenomeGCF_020557905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1056 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage453 / 1056 aa (42.9%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1056 aa
Domain-by-domain annotation4 items
2 HisKA#2
674-740 aa · 67 aa · 6.3% of protein
Raw token
HisKA:674:2.12e-16:740:67:643 HATPase_c#3
787-904 aa · 118 aa · 11.2% of protein
Raw token
HATPase_c:787:1.14e-27:904:118:1094 Response_reg#4
929-1045 aa · 117 aa · 11.1% of protein
Raw token
Response_reg:929:2.56e-28:1045:117:111- Raw architecture: GGDEF:198:7.87e-21:348:157:160#HisKA:674:2.12e-16:740:67:64#HATPase_c:787:1.14e-27:904:118:109#Response_reg:929:2.56e-28:1045:117:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557905::NZ_JAJCJV010000001.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span138561-141731Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ97_00595RefSeq proteinWP_055065895.1
Context group ID
GCF_020557905::NZ_JAJCJV010000001.1::G00005Context members
LIZ97_RS00595
Partner locus tags
LIZ97_RS00595
Partner old locus tags
LIZ97_00595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065895.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AY22Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AY22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ97_RS00595Primary locus identifier stored in the genes table.
Old locus tagLIZ97_00595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJV010000001.1Sequence record reported by the local genomic context database.
Genomic interval138 561-141 731 nt3 171 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 561-141 731 ntGCF_020557905::NZ_JAJCJV010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557905::NZ_JAJCJV010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span138 561-141 731 nt3 171 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 561 nt141 731 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ97_RS00595GCF_020557905#LIZ97_RS00595
HKHybridCurrent focus
138 561-141 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS05680Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0254956
Simplified PFAM architecture for HKOC_0254956
PFAM domain coverage: 452 / 1056 aa (42.8%)
1 aa1056 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[199-350] | HisKA[674-740] | HATPase_c[789-904] | Response_reg[929-1045]
- Domain count: 4
- Matched identifier: HKOC_0254956
- Positioned domains: GGDEF 199-350 ; HisKA 674-740 ; HATPase_c 789-904 ; Response_reg 929-1045
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS05680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_020557905
AssemblyASM2055790v1 · Contighaploid
Genome composition3 926 727 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 101 · HK 51 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key