1 HAMP#1
288-357 aa · 70 aa · 11.7% of protein
Raw token
HAMP:288:0.000000586:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS10340
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS10340Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 597 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-448 aa · 77 aa · 12.9% of protein
Raw token
His_kinase:372:1.83e-25:448:77:803 HATPase_c#3
463-577 aa · 115 aa · 19.3% of protein
Raw token
HATPase_c:463:0.00000000000000347:577:115:109- Raw architecture: HAMP:288:0.000000586:357:70:69#His_kinase:372:1.83e-25:448:77:80#HATPase_c:463:0.00000000000000347:577:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000015.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14105-16905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_10310RefSeq proteinWP_306780953.1
Context group ID
GCF_020557395::NZ_JAJCJK010000015.1::G00013Context members
LIZ56_RS10335LIZ56_RS10340
Partner locus tags
LIZ56_RS10335LIZ56_RS10340
Partner old locus tags
LIZ56_10305LIZ56_10310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780953.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UFE2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UFE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS10340Primary locus identifier stored in the genes table.
Old locus tagLIZ56_10310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000015.1Sequence record reported by the local genomic context database.
Genomic interval15 112-16 905 nt1 794 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 105-16 905 ntGCF_020557395::NZ_JAJCJK010000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000015.1All displayed genes belong to this local TCS context.
Neighborhood span14 105-16 905 nt2 801 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 105 nt16 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS10335GCF_020557395#LIZ56_RS10335
RRunclassified
14 105-15 115 nt · Reverse (-)
LIZ56_RS10340GCF_020557395#LIZ56_RS10340
HKClassicCurrent focus
15 112-16 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS10340The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1071218
Simplified PFAM architecture for HKOC_1071218
PFAM domain coverage: 188 / 597 aa (31.5%)
1 aa597 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[373-448] | HATPase_c[465-576]
- Domain count: 2
- Matched identifier: HKOC_1071218
- Positioned domains: His_kinase 373-448 ; HATPase_c 465-576
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS10340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key